Fit niche climate exposure

Usage

fit_climniche(
  current,
  future,
  occupied = NULL,
  occupied_threshold = 0,
  cnfa = NULL,
  center = NULL,
  sensitivity = NULL,
  A = NULL,
  metric = c("diag", "factor"),
  boundary = 0.95,
  scale = TRUE,
  global_mean = NULL,
  global_sd = NULL,
  conflict_ratio = 0.25
)

Arguments

current: Numeric matrix or data frame of current environmental values.
future: Numeric matrix or data frame of future environmental values.
occupied: NULL, logical vector, row indices, or a numeric vector with one value per row identifying current occurrence, range, or thresholded SDM cells.
occupied_threshold: Threshold used when occupied contains binary or continuous values.
cnfa: Optional CENFA model object.
center: Optional realised niche centre in standardised climate space.
sensitivity: Optional environmental sensitivity weights.
A: Optional niche metric matrix.
metric: Metric construction when A is not supplied.
boundary: Quantile defining the empirical realised niche boundary.
scale: Logical. If TRUE, standardise current and future values.
global_mean: Optional means used for standardisation.
global_sd: Optional standard deviations used for standardisation.
conflict_ratio: Minimum minority sign contribution share used to mark mixed variable responses. Set to NULL to disable this flag.

Value

An object of class climniche_fit.